OBO Foundry dashboard analysis¶

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/tmp/ipykernel_458/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    3
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 3 5628.333333 5805.619031 2.0 2643.5 5285.0 8441.5 11598.0
Declaration 3 1014.666667 1042.156098 2.0 480.0 958.0 1521.0 2084.0
EquivalentClasses 3 75.666667 82.977909 1.0 31.0 61.0 113.0 165.0
InverseObjectProperties 2 26.333333 22.854613 0.0 19.0 38.0 39.5 41.0
SymmetricObjectProperty 2 2.000000 1.732051 0.0 1.5 3.0 3.0 3.0
SubPropertyChainOf 2 48.000000 41.581246 0.0 35.5 71.0 72.0 73.0
SubObjectPropertyOf 2 133.000000 117.554243 0.0 88.0 176.0 199.5 223.0
SubClassOf 2 963.666667 985.692819 0.0 460.5 921.0 1445.5 1970.0
SubAnnotationPropertyOf 2 10.666667 9.712535 0.0 6.5 13.0 16.0 19.0
Rule 2 16.666667 14.433757 0.0 12.5 25.0 25.0 25.0
ObjectPropertyRange 2 39.666667 34.645827 0.0 27.5 55.0 59.5 64.0
ObjectPropertyDomain 2 40.666667 35.571524 0.0 28.0 56.0 61.0 66.0
IrrefexiveObjectProperty 2 5.000000 4.582576 0.0 3.0 6.0 7.5 9.0
InverseFunctionalObjectProperty 2 0.666667 0.577350 0.0 0.5 1.0 1.0 1.0
AnnotationPropertyRangeOf 2 0.666667 0.577350 0.0 0.5 1.0 1.0 1.0
FunctionalObjectProperty 2 4.000000 3.605551 0.0 2.5 5.0 6.0 7.0
FunctionalDataProperty 2 2.666667 2.309401 0.0 2.0 4.0 4.0 4.0
EquivalentObjectProperties 2 1.333333 1.154701 0.0 1.0 2.0 2.0 2.0
DisjointClasses 2 15.666667 13.576941 0.0 11.5 23.0 23.5 24.0
DifferentIndividuals 2 1.333333 1.154701 0.0 1.0 2.0 2.0 2.0
DataPropertyRange 2 3.333333 3.055050 0.0 2.0 4.0 5.0 6.0
DataPropertyDomain 2 3.666667 3.214550 0.0 2.5 5.0 5.5 6.0
ClassAssertion 2 15.333333 13.613719 0.0 10.0 20.0 23.0 26.0
AsymmetricObjectProperty 2 4.666667 4.041452 0.0 3.5 7.0 7.0 7.0
TransitiveObjectProperty 2 12.333333 10.692677 0.0 9.0 18.0 18.5 19.0
ReflexiveObjectProperty 1 1.000000 1.732051 0.0 0.0 0.0 1.5 3.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 3 3192.000000 3312.205157 3.0 1480.5 2958.0 4786.5 6615.0
ObjectSomeValuesFrom 3 386.666667 363.915283 1.0 218.0 435.0 579.5 724.0
DataExactCardinality 2 4.000000 3.464102 0.0 3.0 6.0 6.0 6.0
DataMinCardinality 2 0.666667 0.577350 0.0 0.5 1.0 1.0 1.0
ObjectAllValuesFrom 2 31.000000 27.622455 0.0 20.0 40.0 46.5 53.0
ObjectComplementOf 2 16.000000 18.330303 0.0 6.0 12.0 24.0 36.0
ObjectExactCardinality 2 3.666667 4.725816 0.0 1.0 2.0 5.5 9.0
ObjectHasSelf 2 0.666667 0.577350 0.0 0.5 1.0 1.0 1.0
ObjectIntersectionOf 2 173.000000 196.084166 0.0 66.5 133.0 259.5 386.0
ObjectMinCardinality 2 3.000000 3.000000 0.0 1.5 3.0 4.5 6.0
ObjectOneOf 2 2.000000 1.732051 0.0 1.5 3.0 3.0 3.0
ObjectUnionOf 2 16.333333 14.571662 0.0 10.5 21.0 24.5 28.0
ObjectHasValue 1 2.333333 4.041452 0.0 0.0 0.0 3.5 7.0

OBO Score (Experimental)

ontology score score_dash score_impact
1 omrse 0.497 0.660 0.333
0 apollo-sv 0.200 0.400 0.000
2 tmp 0.141 0.282 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 3.0 0.279333 0.190799 0.141 0.1705 0.2 0.3485 0.497
score_dash 3.0 0.447333 0.193394 0.282 0.3410 0.4 0.5300 0.660
score_impact 3.0 0.111000 0.192258 0.000 0.0000 0.0 0.1665 0.333

OBO dependency graph